miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|53784307|gb|CV501950.1|CV501950 TACAGATCTTCGTTTCTGATGCTGGAGTTCTCGGAGTTTGTTATCTGCTATACCGTATTGCCTTAGTGAAAGGTCTAGCT
TGGCTAGTGTGCATCTACGGTGTACCCCTCCTCGTCGTGAACGGCTTCCTTGTCTTGATCACCTACTTGCAGCACACTCA
CCCATCATTGCCACACTACGATTCAACCGAGTGGGATTGGCTTAGGGGAGCTTTGGCAACCTGTGACAGAGACTATGGGG
TTCTAAACAAGGTCTTCCACAACATCACCGACACTCACGTGGTGCACCATCTGTTCTCAACCATGCCACACTACAACGCG
ATGGAGGCAACCAAAGCAGTCAAGCCACTACTCGGAGACTACTACCAATTCGATGGAACCCCGATTTTCAAGGCAATGTG
GAGGGAAGCTAAAGAGTGTCTCTACGTCGAGAAAGACGAATCATCTCAAGGCAAAGGTGTCTTCTGGTACAAAAACAAGC
TCTGAAATACTAGAACAGAAACTCAGCTTGCTTTGAATTGGTCTTTTGGTAATGTTTGGTCAGTGTCTTGAGTAAGTATT
TTGGATTTAAGTTAATTTAGCTAATGTGTTGTCTTTGTTAGTAAGGGGAGGTTTATGTTTGATGAAATTTTTGATAAATA
AAGGGGAAAATTTTTAGAAACAATATAAAGAGGATTAAAGTGCGTTCTCCACCTCCTCTTAGTTTGTAATGAACTACCAG
TTTTAATATCAGTGGTTGTGTCGTGTCTAACCACAAACGG




Most similar to sp|P48631|FD6E2_SOYBN

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P48631|FD6E2_SOYBN Omega-6 fatty acid desaturase, endoplasmic
           reticulum isozyme 2 OS=Glycine max GN=FAD2-2 PE=2 SV=1
          Length = 383

 Score =  287 bits (735), Expect = 5e-77
 Identities = 126/160 (78%), Positives = 147/160 (91%)
 Frame = +3

Query: 3   QIFVSDAGVLGVCYLLYRIALVKGLAWLVCIYGVPLLVVNGFLVLITYLQHTHPSLPHYD 182
           QI++SDAGVL V Y L+R+A+ KGLAW+VC+YGVPLLVVNGFLVLIT+LQHTHP+LPHY 
Sbjct: 224 QIYISDAGVLAVVYGLFRLAMAKGLAWVVCVYGVPLLVVNGFLVLITFLQHTHPALPHYT 283

Query: 183 STEWDWLRGALATCDRDYGVLNKVFHNITDTHVVHHLFSTMPHYNAMEATKAVKPLLGDY 362
           S+EWDWLRGALAT DRDYG+LNKVFHNITDTHV HHLFSTMPHY+AMEATKA+KP+LG+Y
Sbjct: 284 SSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEY 343

Query: 363 YQFDGTPIFKAMWREAKECLYVEKDESSQGKGVFWYKNKL 482
           Y+FD TP  KAMWREA+EC+YVE D+S++ KGVFWY NKL
Sbjct: 344 YRFDETPFVKAMWREARECIYVEPDQSTESKGVFWYNNKL 383